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accession-icon GSE85963
Carbon starvation along the maize leaf gradient
  • organism-icon Zea mays
  • sample-icon 43 Downloadable Samples
  • Technology Badge Icon Affymetrix Maize Genome Array (maize)

Description

gene expression profiling in different zones along the gradient of the growing maize leaf balde aover a time course of dirunal cycle and carbon starvation by extension of the night

Publication Title

The Interplay between Carbon Availability and Growth in Different Zones of the Growing Maize Leaf.

Sample Metadata Fields

Time

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accession-icon GSE19603
Expression data from Arabipdosis msh1 recA3 double mutant under heat stress
  • organism-icon Arabidopsis thaliana
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

In Arabidposis thaliana, the msh1 recA3 double mutant shows an extensive mitochondrial genome rearrangement and displays pronounced thermotolerance.

Publication Title

Extensive rearrangement of the Arabidopsis mitochondrial genome elicits cellular conditions for thermotolerance.

Sample Metadata Fields

Specimen part

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accession-icon E-MEXP-1410
Transcription profiling of Arabidopsis wild type and msh1 mutant plants
  • organism-icon Arabidopsis thaliana
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Single mutant msh1

Publication Title

Extensive rearrangement of the Arabidopsis mitochondrial genome elicits cellular conditions for thermotolerance.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon E-MEXP-1409
Transcription profiling of Arabidopsis wild type and msh1/recA3 double mutant plants
  • organism-icon Arabidopsis thaliana
  • sample-icon 4 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Double mutant msh1 and recA3

Publication Title

Extensive rearrangement of the Arabidopsis mitochondrial genome elicits cellular conditions for thermotolerance.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE30112
Transcript profiling of soybean msh1 RNAi transgenic lines
  • organism-icon Glycine max
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon Affymetrix Soybean Genome Array (soybean)

Description

The soybean msh1 RNAi transgenic line show various growth phenotype. We use microarray analysis to characterize gene expression pattern for two of the phenotypes - variegation and stunted growth.

Publication Title

MutS HOMOLOG1 is a nucleoid protein that alters mitochondrial and plastid properties and plant response to high light.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE30281
Transcript profiling of Arabidopsis albino msh1 mutants
  • organism-icon Arabidopsis thaliana
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

The soybean msh1 RNAi transgenic line show various growth phenotype. We use microarray analysis to characterize gene expression pattern for two of the phenotypes - variegation and stunted growth.

Publication Title

MutS HOMOLOG1 is a nucleoid protein that alters mitochondrial and plastid properties and plant response to high light.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE35893
Transcript profiling of Arabidopsis msh1 mutants
  • organism-icon Arabidopsis thaliana
  • sample-icon 9 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

The Arabidopsis msh1 mutant show various growth phenotype. We use microarray analysis to characterize gene expression pattern for two of the phenotypes - variegation and stunted growth.

Publication Title

The chloroplast triggers developmental reprogramming when mutS HOMOLOG1 is suppressed in plants.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE62417
Gene expression data of human primary keratinocytes with control or DDX6 knockdown
  • organism-icon Homo sapiens
  • sample-icon 3 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Stem and progenitor cells maintain the tissue they reside in for life by regulating the balance between proliferation and differentiation. How this is done is not well understood. Here, we report that DDX6 is necessary for maintaining human epidermal progenitor cell self-renewal.

Publication Title

DDX6 Orchestrates Mammalian Progenitor Function through the mRNA Degradation and Translation Pathways.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE56371
Transcriptional profiling reveals functional links between RasGrf1 and Pttg1 in pancreatic beta cells
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Expression 430A Array (moe430a)

Description

We used microarrays to investigate gene expression changes in the pancreas of RasGrf1 KO mice. These animals have a reduction in the number and size of the pancreatic islets which lead to lower levels of insulin and glucagon in their blood.

Publication Title

Transcriptional profiling reveals functional links between RasGrf1 and Pttg1 in pancreatic beta cells.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE10631
Molecular profiling of LGL leukemia reveals role of sphingolipid signaling of cytotoxic lymphocytes
  • organism-icon Homo sapiens
  • sample-icon 43 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A Array (hgu133a)

Description

We used microarrays to expression profile peripheral blood mononuclear cells (PBMCs) from LGL leukemia patients and control subjects to identify survival pathways that render leukemic LGL resistant to activation induced cell death.

Publication Title

Molecular profiling of LGL leukemia reveals role of sphingolipid signaling in survival of cytotoxic lymphocytes.

Sample Metadata Fields

No sample metadata fields

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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