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accession-icon GSE41664
Comparison of Gene Expression in Psoriatic Skin from Different Sources
  • organism-icon Homo sapiens
  • sample-icon 150 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Cross-study homogeneity of psoriasis gene expression in skin across a large expression range.

Sample Metadata Fields

Sex, Specimen part, Time

View Samples
accession-icon GSE41663
Re-analysis by microarray using cDNA target of samples from psoriasis patients enrolled in an etanercept trial
  • organism-icon Homo sapiens
  • sample-icon 79 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

cDNA and cRNA hybridization technologies have different, probe-specific sensitivities. We used samples from an etanercept trial (GSE11903) to explore in a real-life setting the uniqueness of each platform.

Publication Title

Cross-study homogeneity of psoriasis gene expression in skin across a large expression range.

Sample Metadata Fields

Specimen part, Time

View Samples
accession-icon GSE41662
Gene expression profiling in psoriatic lesional and non-lesional skin [Set 2]
  • organism-icon Homo sapiens
  • sample-icon 44 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

To explore the psoriasis phenotype and pathways involved in psoriasis, we characterized gene expression in lesional and non-lesional skin from psoriasis patients.

Publication Title

Cross-study homogeneity of psoriasis gene expression in skin across a large expression range.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE34248
Gene expression profiling in psoriatic lesional and non-lesional skin [Set 1]
  • organism-icon Homo sapiens
  • sample-icon 27 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

To explore the psoriasis phenotype, we characterize gene expression in lesional and non-lesional skin from psoriasis patients.

Publication Title

Cross-study homogeneity of psoriasis gene expression in skin across a large expression range.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE53552
Gene expression profiling in psoriatic lesional and non-lesional skin [brodalumab treatment]
  • organism-icon Homo sapiens
  • sample-icon 78 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

To explore the psoriasis phenotype and pathways involved in psoriasis, we characterized gene expression in lesional and non-lesional skin from psoriasis patients. Furthermore, we explored the effects of various doses of brodalumab on lesional skin over time.

Publication Title

Gene expression profiles normalized in psoriatic skin by treatment with brodalumab, a human anti-IL-17 receptor monoclonal antibody.

Sample Metadata Fields

Specimen part, Disease, Disease stage, Treatment, Subject, Time

View Samples
accession-icon GSE71571
Tissue-specific patterns of gene expression in the epithelium and stroma of normal colon in healthy individuals in an aspirin intervention trial
  • organism-icon Homo sapiens
  • sample-icon 175 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

The objectives of this study were to measure effects of an aspirin intervention on gene expression in normal colonic epithelial and stromal tissue in healthy humans and to determine whether response differed by UGT1A6*2 genotype. We also sought to characterize gene expression differences within colonic tissue microenvironments by identifying genes that were differentially expressed between epithelial and stromal tissue.

Publication Title

Tissue-specific patterns of gene expression in the epithelium and stroma of normal colon in healthy individuals in an aspirin intervention trial.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE100431
Pharmacodynamics, Safety, and Clinical Efficacy of AMG 811, a Human Anti-Interferon- Antibody, in Patients With Discoid Lupus Erythematosus
  • organism-icon Homo sapiens
  • sample-icon 60 Downloadable Samples
  • Technology Badge Icon Affymetrix HT HG-U133+ PM Array Plate (hthgu133pluspm)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Brief Report: Pharmacodynamics, Safety, and Clinical Efficacy of AMG 811, a Human Anti-Interferon-γ Antibody, in Patients With Discoid Lupus Erythematosus.

Sample Metadata Fields

Specimen part, Disease

View Samples
accession-icon GSE100093
Pharmacodynamics, Safety, and Clinical Efficacy of AMG 811, a Human Anti-Interferon- Antibody, in Patients With Discoid Lupus Erythematosus [skin]
  • organism-icon Homo sapiens
  • sample-icon 60 Downloadable Samples
  • Technology Badge Icon Affymetrix HT HG-U133+ PM Array Plate (hthgu133pluspm)

Description

This is a phase I randomized, double-blind, placebo-controlled crossover study which sought to evaluate a single dose of AMG 811, an anti-IFN antibody, in patients with DLE.

Publication Title

Brief Report: Pharmacodynamics, Safety, and Clinical Efficacy of AMG 811, a Human Anti-Interferon-γ Antibody, in Patients With Discoid Lupus Erythematosus.

Sample Metadata Fields

Specimen part, Disease

View Samples
accession-icon GSE64228
Expression data of leaves from transgenic barley expressing wheat Lr34 gene
  • organism-icon Hordeum vulgare
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Barley Genome Array (barley1)

Description

The wheat gene Lr34 (Yr18/Pm38/Sr57/Ltn1) encodes a putative ABCG-type of transporter and is a unique source of disease resistance providing durable and partial resistance against multiple fungal pathogens. Lr34 has been found to be functional as a transgene in barley.

Publication Title

The wheat resistance gene Lr34 results in the constitutive induction of multiple defense pathways in transgenic barley.

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE35459
Transcriptome profiles of mouse and human monocyte and dendritic cell subsets
  • organism-icon Mus musculus, Homo sapiens
  • sample-icon 36 Downloadable Samples
  • Technology Badge IconIllumina MouseWG-6 v2.0 expression beadchip, Illumina HumanHT-12 V4.0 expression beadchip

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Human tissues contain CD141hi cross-presenting dendritic cells with functional homology to mouse CD103+ nonlymphoid dendritic cells.

Sample Metadata Fields

Sex, Specimen part, Disease, Disease stage

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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