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accession-icon GSE50131
The transcription program of Runx3 in natural killer cells and CD8+ T cells
  • organism-icon Mus musculus
  • sample-icon 28 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Runx3-mediated transcriptional program in cytotoxic lymphocytes.

Sample Metadata Fields

Sex, Age, Specimen part, Treatment

View Samples
accession-icon GSE50122
Runx3 function in splenic NK cells (IL-2 or IL-15)
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

NK cells are innate immune cells that recognize and kill foreign, virally-infected and tumor cells without the need for prior immunization. NK expansion following viral infection is IL-2 or IL-15-dependent.

Publication Title

Runx3-mediated transcriptional program in cytotoxic lymphocytes.

Sample Metadata Fields

Sex, Age, Specimen part, Treatment

View Samples
accession-icon GSE50123
Runx3 function in splenic NK cells
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

NK cells are innate immune cells that recognize and kill foreign, virally-infected and tumor cells without the need for prior immunization. NK expansion following viral infection is IL-2 or IL-15-dependent.

Publication Title

Runx3-mediated transcriptional program in cytotoxic lymphocytes.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon GSE50119
Runx3 function in CD8+ splenic T cells
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

CD8+T cells are immune cells that recognize foreign antigens on infected and tumor cells, leading to cytokine-dependent expansion and activation of cytotoxicity towards the targets.

Publication Title

Runx3-mediated transcriptional program in cytotoxic lymphocytes.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon GSE50121
Runx3 function in IL-2-activated splenic CD8+ T cells.
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

CD8+T cells are immune cells that recognize foreign antigens on infected and tumor cells, leading to cytokine-dependent expansion and activation of cytotoxicity towards the targets.

Publication Title

Runx3-mediated transcriptional program in cytotoxic lymphocytes.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon GSE52625
Runx3 Regulates Interleukin-15-Dependent Natural Killer Cell Activation
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Transcription factor Runx3 regulates interleukin-15-dependent natural killer cell activation.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon GSE50120
Runx3 function in splenic NK cells activated in vivo by IL-15.
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

NK cells are innate immune cells that recognize and kill foreign, virally-infected and tumor cells without the need for prior immunization. NK expansion following viral infection is IL-2 or IL-15-dependent.

Publication Title

Transcription factor Runx3 regulates interleukin-15-dependent natural killer cell activation.

Sample Metadata Fields

Sex, Age, Specimen part

View Samples
accession-icon GSE136067
Runx3 prevents spontaneous colitis by directing differentiation of anti-inflammatory mononuclear phagocytes
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Runx3 prevents spontaneous colitis by directing the differentiation of anti-inflammatory mononuclear phagocytes.

Sample Metadata Fields

Sex, Specimen part, Cell line

View Samples
accession-icon GSE136066
Runx3 function in colon resident macrophages (RM) and CD11b+ dendritic cells (DC).
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

RUNX3 is one of three mammalian Runt-domain transcription factors that regulate gene expression in several types of immune cells. Runx3-deficiency in mice is associated with a multitude of defects in the adaptive and innate immunity systems, including the development of early onset colitis. Our study reveals that conditional deletion of Runx3 specifically in mononuclear phagocytes (MNP) recapitulates the early onset spontaneous colitis seen in Runx3-/- mice. We show that Runx3 is expressed in colonic MNP, including RM and the dendritic cell cDC2 subsets and its loss results in impaired differentiation/maturation of both cell types.

Publication Title

Runx3 prevents spontaneous colitis by directing the differentiation of anti-inflammatory mononuclear phagocytes.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon GSE26669
Expression data of alloantigen stimulated splenocytes treated with leukocyte costimulatory blockade antibodies or no treatment
  • organism-icon Mus musculus
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

To elucidate the gene expression footprint of antigenically challenged T-cells which had been treated with anti-LFA-1, CTLA4Ig, anti-CD40-ligand antibodies, we performed microarray gene expression analysis comparing the expression profile of costimulatory blockade treated and untreated responder T-cells.

Publication Title

Short-term immunosuppression promotes engraftment of embryonic and induced pluripotent stem cells.

Sample Metadata Fields

Specimen part

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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