refine.bio
  • Search
      • Normalized Compendia
      • RNA-seq Sample Compendia
  • Docs
  • About
  • My Dataset
github link
Showing
of 217 results
Sort by

Filters

Technology

Platform

accession-icon SRP004630
GSE25570: Ovary small RNA
  • organism-icon Drosophila melanogaster
  • sample-icon 2 Downloadable Samples
  • Technology Badge IconIllumina Genome Analyzer

Description

No description.

Publication Title

R2D2 organizes small regulatory RNA pathways in Drosophila.

Sample Metadata Fields

Specimen part, Cell line, Subject

View Samples
accession-icon SRP003823
GSE24317: ago2[414] ovary total RNA
  • organism-icon Drosophila melanogaster
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina Genome Analyzer

Description

No description.

Publication Title

R2D2 organizes small regulatory RNA pathways in Drosophila.

Sample Metadata Fields

Sex, Specimen part, Cell line, Subject

View Samples
accession-icon SRP003842
GSE24310: Canton S Ago1 Immunoprecipitation
  • organism-icon Drosophila melanogaster
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina Genome Analyzer

Description

No description.

Publication Title

R2D2 organizes small regulatory RNA pathways in Drosophila.

Sample Metadata Fields

Sex, Cell line, Subject

View Samples
accession-icon SRP003843
GSE24311: Ago2[414] Ago1 Immunoprecipitation
  • organism-icon Drosophila melanogaster
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina Genome Analyzer

Description

No description.

Publication Title

R2D2 organizes small regulatory RNA pathways in Drosophila.

Sample Metadata Fields

Sex, Cell line, Subject

View Samples
accession-icon SRP003826
GSE24312: r2d2 ovary total RNA
  • organism-icon Drosophila melanogaster
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina Genome Analyzer

Description

No description.

Publication Title

R2D2 organizes small regulatory RNA pathways in Drosophila.

Sample Metadata Fields

Sex, Specimen part, Cell line, Subject

View Samples
accession-icon SRP003846
GSE24316: dcr-2[L811fsX] Ago1 Immunoprecipitation ovary
  • organism-icon Drosophila melanogaster
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIllumina Genome Analyzer

Description

No description.

Publication Title

R2D2 organizes small regulatory RNA pathways in Drosophila.

Sample Metadata Fields

Sex, Cell line, Subject

View Samples
accession-icon GSE65700
Max as a biological blockade that restricts meiotic process in ESCs
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

We explored Max ablation-mediated up-regulation of germ-related genes, especially meiosis-related genes in mouse embryonic stem cells which were cultured either under conventional mouse ES medium or 2i condition using inhibitors against MEK and GSK3b.

Publication Title

Loss of MAX results in meiotic entry in mouse embryonic and germline stem cells.

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon SRP157995
Transcriptome of nascent teratoma cell-derived pluripotent stem cells, Dnd1-KD ESCs and control ESCs.
  • organism-icon Mus musculus
  • sample-icon 16 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

We report transcriptome of nascent teratoma cell-derived pluripotent stem cells, Dnd1-KD ESCs and control ESC by RNA-seq. Overall design: RNA-seq of two independent pluripotent stem cell lines derived form nascent teratoma cell in new-born testis of Dnd1-deficient mice, control E14tg2a ESCs and Dnd1-KD ESCs in dupulicate by using Illumina HiSeq2500.

Publication Title

Derivation of pluripotent stem cells from nascent undifferentiated teratoma.

Sample Metadata Fields

Disease, Cell line, Subject

View Samples
accession-icon SRP001701
Mili-IP, Miwi-IP, and total RNA from mouse adult testis
  • organism-icon Mus musculus
  • sample-icon 3 Downloadable Samples
  • Technology Badge IconIllumina Genome Analyzer II

Description

We deep-sequenced small RNAs after immunoprecipitation of Mili or Miwi, as well as total small RNA from adult mouse testis. The goal of this experiment is to more deeply characterize the piRNA pool from adult mouse testes, using the Illumina platform. Overall design: Comparison of 2 IP libraries with a non-IP library

Publication Title

A broadly conserved pathway generates 3'UTR-directed primary piRNAs.

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE680
Transcript Profiling of Arabidopsis Plant Life Cycle
  • organism-icon Arabidopsis thaliana
  • sample-icon 28 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis Genome Array (ag)

Description

This series contain all stages Arabidopsis plant development. Stages of development includes unfertilized ovule, 24-Hr post-fertilization seed, globular stage seed, cotyledon stage seed, mature green seed, post-mature green seed, post-germination seedling, rosette leaf, root, stem, and floral bud.

Publication Title

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors.

Sample Metadata Fields

No sample metadata fields

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

BSD 3-Clause LicensePrivacyTerms of UseContact