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accession-icon SRP045715
RNA-seq of C.elegans treated with bcat-1 RNAi and controls
  • organism-icon Caenorhabditis elegans
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

Worms were treated with bcat-1 RNAi Jena Centre for Systems Biology of Ageing - JenAge (www.jenage.de) Overall design: 6 samples: 3 replicates for bcat-1 RNAi treatment; 3 replicates for controls

Publication Title

Branched-chain amino acid catabolism is a conserved regulator of physiological ageing.

Sample Metadata Fields

Cell line, Subject

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accession-icon SRP066425
Deep sequencing of mRNA from mouse at five different timepoints in three different tissues (brain, liver, skin)
  • organism-icon Mus musculus
  • sample-icon 112 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

Comparison of temporal gene expression profiles Jena Centre for Systems Biology of Ageing - JenAge (www.jenage.de) Overall design: 115 samples in sum; 5 age groups (2, 9, 15, 24, 30 months); 4 tissues (brain, liver, skin, blood); 5-8 samples per group

Publication Title

Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly.

Sample Metadata Fields

Specimen part, Cell line, Subject

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accession-icon SRP065208
Deep sequencing of mRNA from Danio rerio at five different timepoints in three different tissues (brain, liver, skin)
  • organism-icon Danio rerio
  • sample-icon 75 Downloadable Samples
  • Technology Badge IconIlluminaHiSeq2000

Description

Comparison of temporal gene expression profiles Jena Centre for Systems Biology of Ageing - JenAge (www.jenage.de) Overall design: 75 samples in sum; 5 age groups (6, 12, 24, 36, 42 months); 3 tissues (brain, liver, skin); 5 samples per group

Publication Title

Transcriptomic alterations during ageing reflect the shift from cancer to degenerative diseases in the elderly.

Sample Metadata Fields

No sample metadata fields

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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