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accession-icon GSE42743
Oral Cavity Cancer Compared to Adjacent "Normal" Tissue [Validation Set]
  • organism-icon Homo sapiens
  • sample-icon 99 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Oral Cavity Cancer

Publication Title

A 13-gene signature prognostic of HPV-negative OSCC: discovery and external validation.

Sample Metadata Fields

Sex

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accession-icon GSE41613
A 13-gene signature prognostic of HPV-negative OSCC: discovery and external validation
  • organism-icon Homo sapiens
  • sample-icon 94 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

OSCC is associated with substantial mortality and morbidity. In this study, we built on our previous molecular work to identify and validate a prognostic 13-gene signature that showed a higher ability than tumor stage in predicting survival for patients with

Publication Title

A 13-gene signature prognostic of HPV-negative OSCC: discovery and external validation.

Sample Metadata Fields

Sex, Specimen part, Treatment

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accession-icon GSE30784
Gene expression profiling of oral squamous cell carcinoma (OSCC)
  • organism-icon Homo sapiens
  • sample-icon 221 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

OSCC is associated with substantial mortality and morbidity. To identify potential biomarkers for the early detection of invasive OSCC, we compared the gene expressions of OSCC, oral dysplasia, and normal

Publication Title

Gene expression profiling identifies genes predictive of oral squamous cell carcinoma.

Sample Metadata Fields

Sex

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accession-icon GSE64447
Neonatal Skeletal Progenitors
  • organism-icon Mus musculus
  • sample-icon 19 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Prospectively isolated and characerized skeletal progenitor lineages

Publication Title

Identification and specification of the mouse skeletal stem cell.

Sample Metadata Fields

Specimen part

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accession-icon GSE142874
Neonatal Skeletal Progenitors (Affymetrix)
  • organism-icon Mus musculus
  • sample-icon 19 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Prospectively isolated and characerized skeletal progenitor lineages

Publication Title

Identification and specification of the mouse skeletal stem cell.

Sample Metadata Fields

Specimen part

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accession-icon GSE100696
Expression data from Csf1r deficient rats
  • organism-icon Rattus norvegicus
  • sample-icon 32 Downloadable Samples
  • Technology Badge Icon Affymetrix Rat Gene 2.1 ST Array (ragene21st)

Description

We used microarray to examine changes in gene expression in the absence of Csf1r in the brain and spleen.

Publication Title

Pleiotropic Impacts of Macrophage and Microglial Deficiency on Development in Rats with Targeted Mutation of the <i>Csf1r</i> Locus.

Sample Metadata Fields

Sex

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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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