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accession-icon DRP003868
Global transcriptional response to acidosis
  • organism-icon Homo sapiens
  • sample-icon 26 Downloadable Samples
  • Technology Badge IconIllumina Genome Analyzer IIx

Description

Using a next generation sequencer, the global transcriptional responses to acidosis were investigated in variable human cells

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Cell line

View Samples
accession-icon E-MEXP-1130
Transcription profiling time series of human epithelial cells during development
  • organism-icon Homo sapiens
  • sample-icon 11 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133A Array (hgu133a)

Description

The experiment was designed to generate a time series for epithelial model during development. Each time point had 3 replicates. The data set contained 5 time points over 10 days. They are day0, day3, day5,day7,day10.

Publication Title

Dynamic and physical clustering of gene expression during epidermal barrier formation in differentiating keratinocytes.

Sample Metadata Fields

Age, Specimen part, Time

View Samples
accession-icon SRP055737
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 1 Downloadable Sample
  • Technology Badge IconIonTorrentProton

Description

Cryptococcus neoformans infection and immune cell regulation on human monocytes

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE66603
let-7 controls cancer stemness through ARID3B
  • organism-icon Homo sapiens
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

let-7 Modulates Chromatin Configuration and Target Gene Repression through Regulation of the ARID3B Complex.

Sample Metadata Fields

Specimen part, Cell line

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accession-icon GSE65789
Gene expression profile of OECM1 overexpression let-7i
  • organism-icon Homo sapiens
  • sample-icon 2 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Expression of let-7i results in transcriptome alteractions in head and neck cancer cell line, OECM1.

Publication Title

let-7 Modulates Chromatin Configuration and Target Gene Repression through Regulation of the ARID3B Complex.

Sample Metadata Fields

Cell line

View Samples
accession-icon GSE9254
Normal human colorectal mucosa, cecum, ascending, transverse, sigmoid and rectum
  • organism-icon Homo sapiens
  • sample-icon 17 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Normal human colorectal mucosa was sampled at points along the colon.

Publication Title

Map of differential transcript expression in the normal human large intestine.

Sample Metadata Fields

Specimen part

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accession-icon SRP056985
Homo sapiens Raw sequence reads
  • organism-icon Homo sapiens
  • sample-icon 8 Downloadable Samples
  • Technology Badge IconIlluminaHiSeq2000

Description

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Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon E-MEXP-380
Transcription profiling of human NK cells sorted into CD56dim and CD56bright NK cell subpopulations
  • organism-icon Homo sapiens
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133B Array (hgu133b), Affymetrix Human Genome U133A Array (hgu133a)

Description

Human NK cells were sorted into CD56dim and CD56bright NK cell subpopulations. In order to define characteristics of both populations gene profiling was performed using Affymetrix arrays U133a and U133B.

Publication Title

Gene and protein characteristics reflect functional diversity of CD56dim and CD56bright NK cells.

Sample Metadata Fields

Specimen part

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accession-icon SRP097584
Mus musculus Raw sequence reads
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

T cell lymphoma

Publication Title

PD-1 is a haploinsufficient suppressor of T cell lymphomagenesis.

Sample Metadata Fields

Sex, Specimen part, Cell line

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accession-icon SRP068247
Gallus gallus Transcriptome or Gene expression
  • organism-icon Gallus gallus
  • sample-icon 4 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

To understand the molecular mechanisms underlying AS progression, we assessedblood collected from disease and normal groups and obtained pulmonary arteries fromAS and normal broilers for pathological observation and RNA-seq analysis.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part, Cell line

View Samples
...

refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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