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accession-icon SRP100496
Macrophage responses to the endogenous estrogen surge
  • organism-icon Mus musculus
  • sample-icon 9 Downloadable Samples
  • Technology Badge IconIllumina Genome Analyzer IIx

Description

A transcriptomic approach to understand the physiological responses of peritoneal macropahges to estrogens

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age, Specimen part, Cell line, Treatment

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accession-icon SRP104620
Transcriptome of Microglia
  • organism-icon Mus musculus
  • sample-icon 10 Downloadable Samples
  • Technology Badge IconIllumina Genome Analyzer IIx

Description

RNA-seq of microglia isolated from adult mice, males and females.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age, Specimen part, Cell line, Treatment

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accession-icon SRP033291
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIlluminaHiSeq1000

Description

Superior frontal gyrus grey and white matter

Publication Title

Unique transcriptome patterns of the white and grey matter corroborate structural and functional heterogeneity in the human frontal lobe.

Sample Metadata Fields

No sample metadata fields

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accession-icon SRP121075
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 188 Downloadable Samples
  • Technology Badge Icon

Description

Individual CD27+ CD38+ individual human B cells were analyze with a new RNAseq protocol that captures the 5'' end of transcripts

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

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accession-icon SRP133000
Transcriptional profiling of natural and synthetic chromosomal inversions
  • organism-icon Drosophila melanogaster
  • sample-icon 71 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

Here, we characterize differential expression patterns associated with two chromosomal inversions found in natural Drosophila melanogaster populations. To isolate the impacts of genome structure, we engineered synthetic chromosomal inversions on controlled genetic backgrounds with breakpoints that closely match each natural inversion.

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age, Specimen part

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accession-icon SRP017598
Rattus norvegicus strain:F344/N Transcriptome or Gene expression
  • organism-icon Rattus norvegicus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon

Description

Aflatoxin B1 effects on rat liver transcriptome.

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

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accession-icon SRP103454
Homo sapiens isolate:HEK293T Epigenomics
  • organism-icon Homo sapiens
  • sample-icon 2 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

CBX7-RIP-Seq data for HEK293T cells

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age, Specimen part, Cell line

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accession-icon GSE141416
Comparative gene expression analysis of cells derived from rapamycin and PBS-treated mice
  • organism-icon Mus musculus
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon SRP044097
Isoform-specific gene expression profiling of cardiac and skeletal muscle by RNAseq
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

RBM24 is a major regulator of muscle-specific alternative splicing

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon GSE141415
Comparative gene expression analysis of splenic T cells derived from rapamycin and PBS-treated mice
  • organism-icon Mus musculus
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Gene 1.0 ST Array (mogene10st)

Description

The macrolide rapamycin is known for its immunosuppressive properties since it inhibits mTOR (mammalian target of rapamycin), which activity affects differentiation and functions of various innate and adaptive immune cells involved in graft-versus-host disease development. Since rapamycin procures immunosuppressive effects on the immune response, rapamycin is an attractive candidate for graft-versus-host disease prevention after allogeneic bone marrow transplantation

Publication Title

Rapamycin-based graft-versus-host disease prophylaxis increases the immunosuppressivity of myeloid-derived suppressor cells without affecting T cells and anti-tumor cytotoxicity.

Sample Metadata Fields

No sample metadata fields

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

Powered by Alex's Lemonade Stand Foundation

Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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