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accession-icon GSE19599
Expression data for normal flow sorted hematopietic cell subpopulations
  • organism-icon Homo sapiens
  • sample-icon 15 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Gene expression profiling of normal hematopoietic cell subpopulations

Publication Title

Gene expression signatures in childhood acute leukemias are largely unique and distinct from those of normal tissues and other malignancies.

Sample Metadata Fields

Specimen part

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accession-icon SRP056985
Homo sapiens Raw sequence reads
  • organism-icon Homo sapiens
  • sample-icon 8 Downloadable Samples
  • Technology Badge IconIlluminaHiSeq2000

Description

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Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

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accession-icon E-MEXP-268
Transcription profiling of asymptomatic and symptomatic atherosclerotic plaques from the same patient
  • organism-icon Homo sapiens
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U95 Version 2 Array (hgu95av2)

Description

We compared gene expression profiles between asymptomatic and symptomatic atherosclerotic plaques from the same patient. This was accomplished by analyzing carotid plaques from four patients with bilateral high-grade carotid artery stenoses one being symptomatic (TIA or stroke) and the other asymptomatic.

Publication Title

Microarray analysis reveals overexpression of CD163 and HO-1 in symptomatic carotid plaques.

Sample Metadata Fields

Sex, Age, Specimen part, Disease, Disease stage, Subject, Time

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accession-icon SRP103454
Homo sapiens isolate:HEK293T Epigenomics
  • organism-icon Homo sapiens
  • sample-icon 2 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

CBX7-RIP-Seq data for HEK293T cells

Publication Title

No associated publication

Sample Metadata Fields

Sex, Age, Specimen part, Cell line

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accession-icon SRP069080
Zea mays Transcriptome or Gene expression
  • organism-icon Zea mays
  • sample-icon 42 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

This study was designed to identify root specific transcriptome variation that occurs across genotypically diverse maize lines.

Publication Title

No associated publication

Sample Metadata Fields

Age, Specimen part, Disease

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accession-icon SRP136927
Targeted RNA-seq of human monocytes
  • organism-icon Homo sapiens
  • sample-icon 18 Downloadable Samples
  • Technology Badge IconIon Torrent Proton

Description

The purpose of this RNA-seq experiment was to perform a correlation analysis of mRNA expression levels in LPS-stimulated monocytes from patients with an IKZF1 mutant haploinsufficient phenotype (H167R-a and H167R-b are two siblings carrying IKZF1 p.H167R mutation) versus patients with an IKZF1 mutant dominant negative phenotype (C1, G1) along with five healthy normal controls (HC).

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon SRP136939
Targeted RNA-seq of human naive CD4+ T-cells
  • organism-icon Homo sapiens
  • sample-icon 16 Downloadable Samples
  • Technology Badge IconIon Torrent Proton

Description

The purpose of this RNA-seq experiment was to perform a correlation analysis of mRNA expression levels in naïve CD4+ T cells from patients with an IKZF1 mutant haploinsufficient phenotype (H167R-a carries an IKZF1 p.H167R mutation) versus patients with an IKZF1 mutant dominant negative phenotype (C1, G1) along with five healthy normal controls (HC).

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part

View Samples
accession-icon SRP067888
Gene expression profile of GL261 cells cultured adherently or as neurospheres
  • organism-icon Mus musculus
  • sample-icon 4 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Analysis of gene expression in GL261 cells cultured adherently (AC) or as neurospheres (NS) using RNA-Seq

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part, Cell line

View Samples
accession-icon GSE9254
Normal human colorectal mucosa, cecum, ascending, transverse, sigmoid and rectum
  • organism-icon Homo sapiens
  • sample-icon 17 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

Normal human colorectal mucosa was sampled at points along the colon.

Publication Title

Map of differential transcript expression in the normal human large intestine.

Sample Metadata Fields

Specimen part

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accession-icon E-MEXP-380
Transcription profiling of human NK cells sorted into CD56dim and CD56bright NK cell subpopulations
  • organism-icon Homo sapiens
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133B Array (hgu133b), Affymetrix Human Genome U133A Array (hgu133a)

Description

Human NK cells were sorted into CD56dim and CD56bright NK cell subpopulations. In order to define characteristics of both populations gene profiling was performed using Affymetrix arrays U133a and U133B.

Publication Title

Gene and protein characteristics reflect functional diversity of CD56dim and CD56bright NK cells.

Sample Metadata Fields

Specimen part

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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