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Danio rerio
18 Downloadable Samples
IlluminaGenomeAnalyzerIIx
Description
To investigate the transcriptional regulation in zebrafish liver during the process of regeneration after 1/9 PH
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples- Danio rerio
- 17 Downloadable Samples
- IlluminaGenomeAnalyzerIIx
Description
To investigate the transcriptional regulation in zebrafish larvae exposed environmental stresses, larvae at 96hpf were exposed to cold stress (16 Celsius degree) or hypoxia (5% O2) for 24h, and the controls were maintained at 28 Celsius degree and atmosphere O2 concentration. After environmental exposure, RNAs were extracted and subjected to RNA sequencing using Illumina genome analyzer IIx platform.
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples- Danio rerio
- 3 Downloadable Samples
- IlluminaGenomeAnalyzerIIx
Description
To investigate the transcriptional regulation in zebrafish liver during the process of regeneration after 1/3 PH
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples- Drosophila melanogaster
- 5 Downloadable Samples
- Illumina HiSeq 4000
Description
We sequenced DGRP (Drosophila Genetic Reference Panel) line 208 for strand-specific RNA-seq in head, testis and ovary. The RNA-seq (2x150bp) data is intended to investigate the expression profiles of polymorphic duplications and de novo gene, as well as other lncRNAs.
Publication Title
No associated publication
Sample Metadata Fields
Sex, Specimen part, Cell line
View Samples- Gallus gallus
- 4 Downloadable Samples
Affymetrix Chicken Genome Array (chicken)
Description
Transgenerational effects of early experience on behavioural, hormonal and gene expression responses to acute stress in the precocial chicken. The data for the parental stressed and control birds is available in ArrayExpress with accession E-MTAB-924, while this experiment only concerns their offspring that never been exposed to early life stress.
Publication Title
Transgenerational effects of early experience on behavioural, hormonal and gene expression responses to acute stress in the precocial chicken
Sample Metadata Fields
Sex, Specimen part, Treatment
View Samples- Caenorhabditis elegans
- 186 Downloadable Samples
- Illumina HiSeq 2000
Description
To investigate the effect of local genetic variation on heritable traits, we developed a new recombinant inbred line (RIL) population derived from four wild isolates. The wild isolates were collected from two closely located sites in France: Orsay and Santeuil. By crossing these four genetically diverse parental isolates a population of 200 RILs was constructed. RNA-seq was used to obtain sequence polymorphisms
Publication Title
No associated publication
Sample Metadata Fields
Sex, Specimen part, Cell line
View Samples- Arabidopsis thaliana
- 35 Downloadable Samples
- Illumina HiSeq 2500
Description
No description.
Publication Title
No associated publication
Sample Metadata Fields
Age, Specimen part
View Samples- Homo sapiens
- 30 Downloadable Samples
- Illumina HiSeq 2500
Description
No description.
Publication Title
No associated publication
Sample Metadata Fields
Sex, Age, Specimen part, Disease
View Samples- Mus musculus
- 16 Downloadable Samples
- Illumina HiSeq 2000
Description
In mice, zygotic activation mainly occurs on a wide variety of genes mainly at the 2-cell stage. Long noncoding RNAs (lncRNAs) are increasingly being recognized as molecules that modulate gene expression. In this study, we performed the directional RNA-seq of MII oocytes and 2-cell embryos to identify the long noncoding RNAs activated during ZGA.
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
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SRP045624- Homo sapiens
- 6 Downloadable Samples
- IlluminaHiSeq2000
Description
VHL inactivation is a major component of renal cancer. In this study we re-engineered RCC4 cells to re-express VHL and performed mRNA-sequencing on triplicates to analyse gene and transcript expression changes specific to VHL inactivation.
Publication Title
No associated publication
Sample Metadata Fields
No sample metadata fields
View Samples