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accession-icon GSE85963
Carbon starvation along the maize leaf gradient
  • organism-icon Zea mays
  • sample-icon 43 Downloadable Samples
  • Technology Badge Icon Affymetrix Maize Genome Array (maize)

Description

gene expression profiling in different zones along the gradient of the growing maize leaf balde aover a time course of dirunal cycle and carbon starvation by extension of the night

Publication Title

The Interplay between Carbon Availability and Growth in Different Zones of the Growing Maize Leaf.

Sample Metadata Fields

Time

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accession-icon GSE22947
Expression data from in-vitro induced Interfascicular Cambium of Arabidopsis thaliana
  • organism-icon Arabidopsis thaliana
  • sample-icon 24 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

In-vitro induced establishment and activity of the interfascicular cambium in Arabidopsis thaliana stems under auxin treatments.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part, Treatment, Time

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accession-icon GSE24781
Expression data from stem samples taken from the base and the first internode of Arabidopsis wildtype and wox4-1 plants
  • organism-icon Arabidopsis thaliana
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Stem samples of wildtype Columbia plants and the wox4-1 mutant (Gabi_462G01) were analyzed in order to draw a connection between general transcriptomic changes during interfascicular formation in the wildtype and WOX4-dependent gene regulation during this process.

Publication Title

WOX4 imparts auxin responsiveness to cambium cells in Arabidopsis.

Sample Metadata Fields

Specimen part

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accession-icon GSE17496
Analysis of polyploidy-associated transcriptional gene silencing (paTGS) mutants
  • organism-icon Arabidopsis thaliana
  • sample-icon 9 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

A case of transcriptional gene silencing, originally observed in tetraploid Arabidopsis plants, created an epiallele resistant to many mutations or inhibitor treatments that activate other suppressed genes. This raised the question about the molecular basis of this extreme stability.

Publication Title

Cooperation of multiple chromatin modifications can generate unanticipated stability of epigenetic States in Arabidopsis.

Sample Metadata Fields

Specimen part

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accession-icon GSE18666
Persistent heat stress in Arabidopsis
  • organism-icon Arabidopsis thaliana
  • sample-icon 8 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Analysis of transcriptional changes upon persistent heat stress with emphasis on epigenetically regulated genes

Publication Title

Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis.

Sample Metadata Fields

Specimen part

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accession-icon GSE24763
Expression data from NPA treated stems of Arabidopsis thaliana.
  • organism-icon Arabidopsis thaliana
  • sample-icon 6 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

In-vivo induced establishment and activity of the interfascicular cambium in Arabidopsis thaliana stems under NPA treatments.

Publication Title

WOX4 imparts auxin responsiveness to cambium cells in Arabidopsis.

Sample Metadata Fields

Specimen part, Treatment

View Samples
accession-icon GSE23892
Expression data from 5 day old Arabidopsis thaliana seedlings
  • organism-icon Arabidopsis thaliana
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Affymetrix Arabidopsis ATH1 Genome Array (ath1121501)

Description

Upon induction of DNA damage Arabidopsis thaliana plants initiate a transcriptional response program governed by signalling cascades which are activated by the ATM and ATR kinases

Publication Title

GMI1, a structural-maintenance-of-chromosomes-hinge domain-containing protein, is involved in somatic homologous recombination in Arabidopsis.

Sample Metadata Fields

Specimen part

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accession-icon GSE59562
Gene expression data of the Arabidopsis thaliana mutant aladin
  • organism-icon Arabidopsis thaliana
  • sample-icon 12 Downloadable Samples
  • Technology Badge Icon Arabidopsis Gene 1.0 ST Array (aragene10st)

Description

The ALADIN protein is a component of the nuclear pore complex in higher eukaryotes. Alteration in ALADIN is the basis for the human disease called triple A syndrome (Achalasia-Addisonianism-Alacrima Syndrome). A recent report showed that ALADIN deficiency decreases the tolerance to oxidative stress in human cells and impairs their ability to proliferate. An ALADIN homologue exists in plants, but its functions are still unknown. Therefore, the role of ALADIN was investigated in Arabidopsis thaliana in link with the regulation of the cell cycle.

Publication Title

No associated publication

Sample Metadata Fields

Age, Specimen part

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accession-icon GSE57542
Expression data measured by Nanostring and microarray of monocyte-derived dendritic cells from healthy individuals stimulated with LPS, influenza, or IFN-beta, or left unstimulated
  • organism-icon Homo sapiens
  • sample-icon 228 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Gene 1.0 ST Array (hugene10st)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

Common genetic variants modulate pathogen-sensing responses in human dendritic cells.

Sample Metadata Fields

Sex, Age, Race, Subject

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accession-icon GSE36139
SNP and Expression data from the Cancer Cell Line Encyclopedia (CCLE)
  • organism-icon Homo sapiens
  • sample-icon 882 Downloadable Samples
  • Technology Badge Icon Affymetrix Human Genome U133 Plus 2.0 Array (hgu133plus2)

Description

This SuperSeries is composed of the SubSeries listed below.

Publication Title

The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity.

Sample Metadata Fields

No sample metadata fields

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

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Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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