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accession-icon SRP095378
Arabidopsis thaliana Raw sequence reads
  • organism-icon Arabidopsis thaliana
  • sample-icon 2 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

Transcriptomic analysis of BnLATE-regulated pathways to investigate the genome-wide effects of BnLATE overexpression on transcription

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

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accession-icon SRP094871
Arabidopsis thaliana Raw sequence reads
  • organism-icon Arabidopsis thaliana
  • sample-icon 6 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

Overexpression of the novel Arabidopsis gene At5g02890

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

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accession-icon SRP132125
ZmGRP1 CRISPR/Cas9 RNA sequencing
  • organism-icon Zea mays
  • sample-icon 7 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

To study the splicing factor role of ZmGRP1

Publication Title

No associated publication

Sample Metadata Fields

Sex, Specimen part, Disease, Disease stage, Cell line, Treatment

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accession-icon SRP077851
Zea mays Transcriptome or Gene expression
  • organism-icon Zea mays
  • sample-icon 5 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2500

Description

The Mechanisms of Maize Resistance to Fusarium verticillioides by comprehensive analysis of RNA-seq Data

Publication Title

No associated publication

Sample Metadata Fields

Age, Specimen part, Disease, Disease stage, Treatment

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accession-icon SRP052817
Homo sapiens Transcriptome or Gene expression
  • organism-icon Homo sapiens
  • sample-icon 4 Downloadable Samples
  • Technology Badge IconIlluminaHiSeq2000

Description

Characterization of circular RNAs in Ovarian cancer

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon SRP014902
Sus scrofa strain:Duroc and wild boar Transcriptome or Gene expression
  • organism-icon Sus scrofa
  • sample-icon 3 Downloadable Samples
  • Technology Badge IconIllumina Genome Analyzer IIx

Description

Pig RNA-seq.

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
accession-icon SRP082943
Zea mays Transcriptome on PPDK
  • organism-icon Zea mays
  • sample-icon 72 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000

Description

To reveal the dynamic expression of genes involved in PPDK regulation, different leaf sections of PPDK mutant, wild type and its heterozygous, which were grown under high and low light, were subjected to RNA-seq sequencing.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

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accession-icon DRP002851
Long non-coding RNA UPAT promotes colon tumorigenesis by inhibiting degradation of UHRF1
  • organism-icon Homo sapiens
  • sample-icon 8 Downloadable Samples
  • Technology Badge IconIllumina HiSeq 2000, Illumina Genome Analyzer IIx

Description

1. To identify lncRNA regulating colorectal tumorigenesis, we performed RNA-seq analysis of cells with high and low tumorigenicity 2. To study the role of UPAT in colorectal cancer cells, we investigated the gene expression profiles of HCT116 cells in which UPAT expression had been suppressed by siRNA.

Publication Title

No associated publication

Sample Metadata Fields

Cell line

View Samples
accession-icon GSE55570
Gene expression data of two different strains of laying hens from a small group housing system
  • organism-icon Gallus gallus
  • sample-icon 60 Downloadable Samples
  • Technology Badge Icon Affymetrix Chicken Gene 1.0 ST Array (chigene10st)

Description

We used a chicken RNA microarray to identify differentially expressed genes in order to compare two layer lines kept in a small group housing system Eurovent Deutsch.

Publication Title

No associated publication

Sample Metadata Fields

Specimen part

View Samples
accession-icon GSE13799
Hippocampal gene expression changes during age-related cognitive decline
  • organism-icon Mus musculus
  • sample-icon 18 Downloadable Samples
  • Technology Badge Icon Affymetrix Mouse Genome 430 2.0 Array (mouse4302)

Description

Comparison of hippocampal gene expression between normal young animals and older animals with good spatial memory and older animals with poor spatial memory

Publication Title

No associated publication

Sample Metadata Fields

No sample metadata fields

View Samples
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refine.bio is a repository of uniformly processed and normalized, ready-to-use transcriptome data from publicly available sources. refine.bio is a project of the Childhood Cancer Data Lab (CCDL)

fund-icon Fund the CCDL

Developed by the Childhood Cancer Data Lab

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Cite refine.bio

Casey S. Greene, Dongbo Hu, Richard W. W. Jones, Stephanie Liu, David S. Mejia, Rob Patro, Stephen R. Piccolo, Ariel Rodriguez Romero, Hirak Sarkar, Candace L. Savonen, Jaclyn N. Taroni, William E. Vauclain, Deepashree Venkatesh Prasad, Kurt G. Wheeler. refine.bio: a resource of uniformly processed publicly available gene expression datasets.
URL: https://www.refine.bio

Note that the contributor list is in alphabetical order as we prepare a manuscript for submission.

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